[Biojava-l] Retrieve sequence from NCBI

[Roy Park]

The following code should help you sort it out.

	BufferedReader br = new BufferedReader(new
FileReader(genbankFileName));
	SequenceIterator seqIter = SeqIOTools.readGenbank(br);
	while (seqIter.hasNext()) {
		Sequence thisSeq = seqIter.nextSequence();
		String thisAccession = thisSeq.getName();
		Annotation thisAnnot = thisSeq.getAnnotation();
		ArrayList (or String) value = thisAnnot.getProperty("XX");
		.
		.
		.
	}

The key is the org.biojava.bio.seq.io.SeqIOTools class.  :)

Roy


-----Original Message-----
From: mbarenbo@gmu.edu [mailto:mbarenbo@gmu.edu]
Sent: Friday, June 28, 2002 2:02 PM
To: biojava-l@biojava.org
Subject: [Biojava-l] Retrieve sequence from NCBI


Could you suggest me how I can retrieve GenBank file from NCBI using 
Java or BioJava classes?  Thank you.

Max

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