[Biojava-l] Problem with ProfileHMM source

[Lachlan Coin]

Hi Tisanai,

I think you are right.  Does anyone mind if I make this (minor) update?

Lachlan




> --__--__--
> 
> Message: 6
> From: "Tisanai" <T.Krisanathamakul@dcs.shef.ac.uk>
> To: <biojava-l@biojava.org>
> Date: Wed, 24 Jul 2002 13:27:58 +0100
> Subject: [Biojava-l] Problem with ProfileHMM source
> 
> Hi,
>  
>    I have a problem with ProfileHMM source. In the code line 223 that is
> 
>         if(i > 1) {
>           createTransition(dO, dN);
>           createTransition(dO, mN);
>           createTransition(dN, iN);
>         }     
> 
>   If it is like this there will be no transition from d-1 to i-1 right?
> 
>   Why should it be like this
> 
>         if(i > 1) {
>           createTransition(dO, dN);
>           createTransition(dO, mN);
>           createTransition(dN, iN);
>         }     
>        else
>           createTransition(dN, iN);
> 
> 
> Thank you
> 
> Tisanai
> 
> 
> --__--__--
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
> 
> 
> End of Biojava-l Digest
> 

-------------------------------------------------------------
Lachlan Coin			    
Wellcome Trust Sanger Institute		Magdalene College
Cambridge  CB10 1SA			Cambridge CB30AG
Ph: +44 1223 494 820			
Fax: +44 1223 494 919
------------------------------------------------------------