[Biojava-l] Parsing SwissProt flat file through BioJava

[Schreiber, Mark]

Hi -

Possibly this info has ended up in the Annotation object of the
sequence. Does anyone else have an explanation for this?

- Mark


> -----Original Message-----
> From: Santosh Kumar [mailto:santosh@molecularconnections.com] 
> Sent: Wednesday, 3 July 2002 4:31 p.m.
> To: Schreiber, Mark
> Subject: RE: [Biojava-l] Parsing SwissProt flat file through BioJava
> 
> 
> 
> 
> Hey ,
> 
> I am able to retrieve the data from SwissProt flat files but 
> was surprised when I didn't get the data corresponding to FT 
> & SQ from the same flat file.I donn't know the reason.
> 
> Plz let me know if I am missing same points.
> 
> regards
> 
> Santosh
> 
> -----Original Message-----
> From: Schreiber, Mark [mailto:mark.schreiber@agresearch.co.nz]
> Sent: Wednesday, June 26, 2002 5:18 AM
> To: Rahul Deshpande; biojava-l@biojava.org
> Cc: Santosh Kumar
> Subject: RE: [Biojava-l] Parsing SwissProt flat file through BioJava
> 
> 
> >From Memory I think there is a static method in the class SeqIOTools
> that can do this for you.
> 
> - Mark
> 
> > -----Original Message-----
> > From: Rahul Deshpande [mailto:rahul@molecularconnections.com]
> > Sent: Tuesday, 25 June 2002 6:21 p.m.
> > To: biojava-l@biojava.org
> > Cc: Santosh Kumar
> > Subject: [Biojava-l] Parsing SwissProt flat file through BioJava
> >
> >
> > Hello,
> >
> > I am Rahul Deshpande. I work for a bio informatics company. 
> Recently I 
> > came across biojava. I have a question about biojava.
> >
> > How can we read the SwissProt flat files using biojava? The 
> closest we 
> > could come was org.biojava.bio.seq.io.EmblLikeFormat class 
> which has 
> > methods to return the two letter code and the remaining data in the
> > line. Can we retrieve the data for each protein in the
> > SwissProt flat file instead of reading each line by each
> > line? Are there any methods like that?
> >
> > Regards,
> > Rahul Deshpande
> > Molecularconnections Pvt. Ltd.
> > A203, Blue Cross Chambers,
> > Infantry Road Cross,
> > Bangalore 560001
> > Ph: +(91)-80-5598502, 5327919
> >
> > _______________________________________________
> > Biojava-l mailing list  -  Biojava-l@biojava.org 
> > http://biojava.org/mailman/listinfo/biojava-l
> >
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