[Biojava-l] Matching transfac matrices

[Stein Aerts]

Hello,

does anyone have experience matching matrices from the Transfac library of
transcription factor binding sites to a sequence? In other words, would
there be a biojava method that covers the functionality of programs like
Matinspector or Match?

Thanks in advance,
Stein Aerts.


Ir Stein Aerts
Katholic University Leuven, ESAT-SCD
Kasteelpark Arenberg 10
3001 Heverlee, Belgium
Tel +32-16-32.17.91
Fax +32-16-32.19.70
http://www.esat.kuleuven.ac.be/~dna/BioI/