[Biojava-l] Re: RNA secondary structure prediction

[Matthew Pocock]

You didn't miss it. Predicting 2ndary structure in RNA is a hard 
problem. You may want to check out Sean Eddy's web site as he was 
interested in this stuff.

Matthew

Karen Petrosyan wrote:
> Well, I guess the answer is negative. I've found only
> RNATools/Feature classes with an interface. Those
> classes do not contain what I'm looking for.
> Do I miss anything?
> 
> 
> On Sun, 10 Feb 2002, Karen Petrosyan wrote:
> 
> 
>>Hi biojava developers:
>>
>>I'm wondering if biojava contains any RNA secondary
>>structure prediction. I'm looking for a Java class(es)
>>that would take a sequence as input and will then
>>output a secondary structure being able to predict
>>e.g. stem-loops.
>>
>>I'll appreciate any info/comments.
>>
>>Best regards,
>>Karen
>>
>>
>>
> 
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> 
> 




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