[Biojava-l] HitSectionSAXParser and BlastLikeVersionSupport

[Roy Park]

Hi there,

I'm trying to write a small program that reads in only the HIT section of
BLAST output (i.e. starting with ">"), by instantiating a
HitSectionSAXParser class, and I noticed that the BlastLikeVersionSupport
variable oVersion needs to be already populated by the time the class is
instantiated (e.g. with BlastLikeVersionSupport.iProgram = some value).
Thing is, the iProgram member currently has a private scope, and there is no
method available to set it to some other value (i.e. setProgram()).

I know that from the look of the *SAXParser classes, they were written
specifically only to process the full BLAST results.  Could we make all
*SAXParser classes public, as well as make setters for the
BlastLikeVersionSupport class?  Let me know what you think.  Thanks!

Roy Park
Scientific Programmer
Bioinformatics Department
Lexicon Genetics Incorporated
The Woodlands, Texas  77380
T: (281) 863-3245
F: (281) 863-8092
rpark@lexgen.com



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