[Biojava-l] importing kegg files...
Michael Jones
mjones@mpi.com
Mon, 04 Feb 2002 10:53:44 -0500
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I spent about a year on this at NetGenics. Essentially I converted their
web image maps into NetGenics SmartMedia format. A CORBA interface that
would allow object/actions to be linked with locations in Media.
There are some fairy easily pars-able files at
ftp://kegg.genome.ad.jp/pathways/ The ftp site is down right now. I took
the locations in those files and mapped them to the images and then had
some action listener respond to mouse clicks on the image. Sometimes I
thought it would be better to just use a web interface but you could do
some pretty cool coloring and object relation stuff by keeping it in a GUI
app.
I know this isn't much help but it just struck a cord with me and I thought
I would share. Maybe someone at NetG could Open Source some of the code.
At 10:35 AM 2/4/2002 +0000, Matthew Pocock wrote:
>Geetha Vasudevan wrote:
>>Hello,
>>Does anyone have methods to display KEGG pathway files? thanks for any
>>info.
>>-Geetha.
>>_______________________________________________
>>Biojava-l mailing list - Biojava-l@biojava.org
>>http://biojava.org/mailman/listinfo/biojava-l
>
>I'd be interested in this as well.
>
>Matthew
>
>_______________________________________________
>Biojava-l mailing list - Biojava-l@biojava.org
>http://biojava.org/mailman/listinfo/biojava-l
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I spent about a year on this at NetGenics. Essentially I converted their
web image maps into NetGenics SmartMedia format. A CORBA interface that
would allow object/actions to be linked with locations in Media.
<br><br>
There are some fairy easily pars-able files at
<a href="ftp://kegg.genome.ad.jp/pathways/" eudora="autourl"><font color="#0000FF"><u>ftp://kegg.genome.ad.jp/pathways/</a></u></font>
The ftp site is down right now. I took the locations in those files and mapped them to the images and then had some action listener respond to mouse clicks on the image. Sometimes I thought it would be better to just use a web interface but you could do some pretty cool coloring and object relation stuff by keeping it in a GUI app. <br><br>
I know this isn't much help but it just struck a cord with me and I thought I would share. Maybe someone at NetG could Open Source some of the code. <br><br>
At 10:35 AM 2/4/2002 +0000, Matthew Pocock wrote:<br>
<blockquote type=cite class=cite cite>Geetha Vasudevan wrote:<br>
<blockquote type=cite class=cite cite>Hello,<br>
Does anyone have methods to display KEGG pathway files? thanks for any<br>
info.<br>
-Geetha.<br>
_______________________________________________<br>
Biojava-l mailing list - Biojava-l@biojava.org<br>
<a href="http://biojava.org/mailman/listinfo/biojava-l" eudora="autourl">http://biojava.org/mailman/listinfo/biojava-l</a><br>
</blockquote><br>
I'd be interested in this as well.<br><br>
Matthew<br><br>
_______________________________________________<br>
Biojava-l mailing list - Biojava-l@biojava.org<br>
<a href="http://biojava.org/mailman/listinfo/biojava-l" eudora="autourl">http://biojava.org/mailman/listinfo/biojava-l</a><br>
</blockquote><br>
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