[Biojava-l] Java implementation of Smith-Waterman algorithm

[Ryan Golhar]

If there isn't one, I have an implementation of it in Java.  I wrote it
directly from the algorithm as described in J. Mol Bio.  Its pretty straight
forward ie no modifications or optimizations...

Ryan



-----Original Message-----
From: biojava-l-admin@biojava.org [mailto:biojava-l-admin@biojava.org]On
Behalf Of borg collective
Sent: Saturday, August 17, 2002 3:28 AM
To: Biojava-l@biojava.org
Subject: [Biojava-l] Java implementation of Smith-Waterman algorithm


Is there a Java implementation of Smith-Waterman algorithm available on
biojava?  I was not able to find any reference to it in the documentation.
If there isn't one, does anyone know where I can obtain the source code for
one?  Thanks



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