[Biojava-l] Re: Gene expression data/microarrays

[Matthew Pocock]

Hi Manuel,

Feel free to pillage any code from the expression-browser code-base. You 
will find it realy nasty. We should realy start implementing 
MAML-complient APIs. For the data-storage, we should probably use the 
COLT library from Cern as it gives us high-performance matrix maths code.

If you are keen to get involved, I sudgest that you put together a 
simple API or list of requirements or something, and get the ball rolling.

Good luck,

Matthew

Thomas Down wrote:

> On Sun, Sep 30, 2001 at 10:06:15AM +0100, David Huen wrote:
> 
>>On Thu, 30 Sep 1999, Manuel Simoni wrote:
>>
>>
>>>I am currently working on an application analyzing microarray data at the
>>>tyrolean cancer research institute.
>>>
>>>I've been reading the biojava list for quite a while, but never saw
>>>something about microarrays. So if there's a group of people working on
>>>this, I'd like to join and contribute, or else, found that group.
>>>
>>>
>>I think Matt Pocock (who developed much of Biojava) has (had?) microarray
>>interests but I don't know if that interest has been expressed as code to
>>date.
>>
> 
> Yes, Matthew did do an expression browser application:
> 
>   http://www.sanger.ac.uk/Users/mrp/java/ExpressionBrowser/
> 
> Thomas.
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