[Biojava-l] java or perl?

[Jason Stajich]

There is an AceDB adaptor in perl that Lincoln Stein wrote - you may want
to check it out as I think it will help you get started.  
http://stein.cshl.org/AcePerl/

We have functionality in bioperl for reading sequences from AceDB files,
but not a whole lot else since there is all the necessary functionality in
the AcePerl package.

On Mon, 9 Jul 2001 Reynoldsvt@aol.com wrote:

> Hi
> 
> I am just getting in the bioinformatics field, and I am wondering if easier 
> to design programs to perform bioinformatics task in java or perl.  I have 
> visited both biojava, and bioperl, and am not sure where to begin. 
> 
> Specifically I am interesting in writing a program which queries the ACEDB as 
> I am compliling information for my own speicialized C. Elegans database.  I 
> was wondering which biojava package contained the java classes that would 
> allow me to do this.  I couldn't seem to locate the...your help would be 
> greatly appreciated...
> 
> thanks
> 
> Dave
> 

Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/