[Biojava-l] Fasta search parsing checked in

[Keith James]

Hi,

Since the last snapshot I've fixed a couple of problems with vetoing
changes to the search results/hits/subhits (which were supposed to be
immutable, but weren't). I've added creation of GappedSymbolLists to
represent the hit alignments. I think that the basic functionality is
complete.  I'll add a tutorial/example soon.

cheers,

-- 

-= Keith James - kdj@sanger.ac.uk - http://www.sanger.ac.uk/Users/kdj =-
The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SA