[Biojava-l] AGAVE IO in BioJava

[Brian King]

Thomas,

Yes, we'd be happy to see the BioJava AGAVE conversion code in the BioJava
CVS tree soon.  Please do the initial checkin, and then let Hanning and
myself have an account so we can update it.

Brian

> -----Original Message-----
> From: Thomas Down [mailto:td2@sanger.ac.uk]
> Sent: Thursday, December 20, 2001 1:22 PM
> To: Brian King
> Cc: HanningN@doubletwist.com; biojava-l@biojava.org
> Subject: Re: [Biojava-l] AGAVE IO in BioJava
> 
> 
> On Thu, Dec 20, 2001 at 01:06:12PM -0800, Brian King wrote:
> > 
> > Thomas,
> > 
> > I attached the code for BioJava AGAVE XML conversion.  The 
> code is similar
> > to the GAME IO package.  The zip file has an ANT build.xml 
> file, and there
> > is a JUnit unit test called TestAgaveHandler.java.  The unit test
> > demonstrates handling of nested features and sequence assembly.
> 
> Hi!
> 
> This is /very/ cool.  Just built and tested it, and
> everything seems good.  I'm about to take a proper look
> though the code now.
> 
> Are you happy to see this code checked into the main
> tree soon? (i.e. Agave support becomes an out-of-the-box BioJava
> feature).  If so, would you (or Hanning Ni) like a CVS account
> so that you can upload and maintain the code yourself, or would
> you prefer another developer to handle the initial checkin?
> 
> Thanks for all your work on this,
> 
>     Thomas.
>