[Biojava-l] Error in AlphabetManager.xml

[Simon Foote]

There's an error in the AlphabetManager.xml file which will causes the 
parsing of Genbank DNA containing the ambiguity symbol "m" to fail.

The cause is the ambiguity symbol "k" which is mis-identified. It should 
read as follows and not as "cytosine adenine".

      <ambiguityMapping char="k">
        <symbolref name="guanine" />
        <symbolref name="thymine" />
      </ambiguityMapping>

Cheers,
Simon Foote

-- 
Bioinformatics Specialist
Institute for Biological Sciences
National Research Council of Canada
[T] 613-991-4342  [F] 613-952-9092