[Biojava-l] fresh checkout doesn't build

[Michael L. Heuer]

Hello,


A fresh checkout of the main trunk doesn't build as of this afternoon:

compile:
    [javac] Compiling 610 source files to
/home/heuerm/working/biojava-live/ant-build/classes/main
    [javac]
/home/heuerm/working/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/CharacterTokenizat
ion.java:55: cannot resolve symbol
    [javac] symbol  : class TokenType
    [javac] location: class org.biojava.bio.seq.io.CharacterTokenization
    [javac]     public TokenType getTokenType() {
    [javac]            ^
    [javac]
/home/heuerm/working/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/WordTokenization.j
ava:52: cannot resolve symbol
    [javac] symbol  : class TokenType
    [javac] location: class org.biojava.bio.seq.io.WordTokenization
    [javac]     public TokenType getTokenType() {
    [javac]            ^
    [javac]
/home/heuerm/working/biojava-live/ant-build/src/main/org/biojava/bio/seq/FramedFeature.java:52
: cannot resolve symbol
    [javac] symbol  : class Strand
    [javac] location: interface org.biojava.bio.seq.FramedFeature
    [javac]   Strand getStrand();
    [javac]   ^
    [javac]
/home/heuerm/working/biojava-live/ant-build/src/main/org/biojava/bio/seq/impl/SimpleFramedFeat
ure.java:56: cannot resolve symbol
    [javac] symbol  : class ReadingFrame
    [javac] location: class org.biojava.bio.seq.impl.SimpleFramedFeature
    [javac]   public ReadingFrame getReadingFrame() {
    [javac]          ^
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -deprecation for details.
    [javac] 4 errors

BUILD FAILED


Strangely enough, it appears that none of the offending source files have
been updated in cvs since Thomas' log entry "Big landing of the new
SymbolTokenization API" 13 days ago:


% > cvs log src/org/biojava/bio/seq/io/CharacterTokenization.java

RCS file:
/home/repository/biojava/biojava-live/src/org/biojava/bio/seq/io/CharacterTokenization.java,v
Working file: src/org/biojava/bio/seq/io/CharacterTokenization.java
head: 1.3
branch:
locks: strict
access list:
symbolic names:
keyword substitution: kv
total revisions: 3;	selected revisions: 3
description:
----------------------------
revision 1.3
date: 2001/11/20 16:41:15;  author: thomasd;  state: Exp;  lines: +17 -3
Big landing of new SymbolTokenization API.  Have fun!
----------------------------
revision 1.2
date: 2001/08/21 15:04:20;  author: thomasd;  state: dead;  lines: +0 -0
Get rid of these now, since they were checked in prematurely
and are causing trouble...
----------------------------
revision 1.1
date: 2001/08/11 17:29:28;  author: thomasd;  state: Exp;
Added prototype tokenizations.
=============================================================================


   michael