[Biojava-l] (no subject)

[Subba_Raju]

dear biojava associates,
i am somewhat new to java.
my problem is that i have an exe( i have only binaries ) application which
actually takes some command line arguments but i dont want to access the
application through the command line instead my need is to give those
arguments through java code .
can any one please suggets me classes or methods for making this possible
thanks for ur  earlier attention 
thanks inadvance
Subba Raju,
iL@bs
India