[Biojava-l] SimpleAssembly.subList()

[Schreiber, Mark]

The SimpleAssembly test seems to be failing, I get the following output:
 
gattacannnnnnnnnnnnn
g
gatta
ttacann
ttacannnn
tcg
nnnn
fragment at 1-7
    test at 2-3
fragment at 10-13
    test at 9-10
        sub-test at 9-9

I am thinking all those n's shouldn't be there (at least some of them
anyhow)

Mark


> -----Original Message-----
> From: Thomas Down [mailto:td2@sanger.ac.uk]
> Sent: Thursday, April 05, 2001 3:58 AM
> To: Thomas Down
> Cc: Schreiber, Mark; 'Biojava-L (E-mail)
> Subject: Re: [Biojava-l] SimpleAssembly.subList()
> 
> 
> On Wed, Apr 04, 2001 at 04:14:04PM +0100, Thomas Down wrote:
> > 
> > I'm going to refactor SimpleAssembly (which is there mainly
> > as an example, really) to use AssembledSymbolList behind the
> > scenes (AssembledSymbolList in turn started out life as a cut
> > and paste of SimpleAssembly -- bad, bad, idea...).  
> AssembledSymbolList
> > is used for assembly in the DAS client and the biojava-ensembl
> > bridge, and it seems to have had this bug fixed at some point
> > in the past, but it lives on in SimpleAssembly.
> 
> I've done this refactoring -- everything should be a little
> more maintainable now, anyway.
> 
>    Thomas.
>