[Biojava-l] Pfam utilities

[Simon Brocklehurst]

Matthew Pocock wrote:

> Arnon Klein wrote:
>
> > Hi,
> >  Is there existing code that parses/analyzes Pfam libraries?
> >
> > Arnon
> >
> > --
> >
> >
> > _______________________________________________
> > Biojava-l mailing list  -  Biojava-l@biojava.org
> > http://biojava.org/mailman/listinfo/biojava-l
>
> Last time I checked we didn't have an out-of-the-box solution. It would
> be realy good to have - the interpro project is on my list of things to
> publish as DAS. There may be parsers that nearly do the job either in
> ....programs.search or ....programs.sax and if you can convince the Pfam
> suite to talk gff, we have parsers for that in ....programs.gff - Can
> anybody else confirm/deny our Pfam abilities?

There's nothing in program.sax

S.
--
Simon M. Brocklehurst, Ph.D.
Head of Bioinformatics & Advanced IS
Cambridge Antibody Technology
The Science Park, Melbourn, Cambridgeshire, UK
http://www.CambridgeAntibody.com/
mailto:simon.brocklehurst@CambridgeAntibody.com