[Biojava-l] Mutable sequence dbs

Thu, 10 Aug 2000 14:45:10 +0100

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I am enclosing the interface MutableSequenceDB with which I'm happy so far,
and in addition a convenience class SequenceIteratorDB implementing this
interface, which lets you view one or multiple SequenceIterator(s) as a
database.

Note the 'import' statements do not yet comply with the 1.0 release of
BioJava (I think, because SequenceDB is no longer in org.biojava.bio.seq).
In addition, SequenceIteratorDB references things you don't have: an
ExceptionHandler interface, and a MemorySequenceDB class. The first should
be obvious from the code, but I can provide it, too, if you wish. The
latter is basically a HashSequenceDB, slightly modified so that it
implements MutableSequenceDB. I can also provide this, if you wish.

I hope the attachments don't get munged by the list server.

     Hilmar

(See attached file: MutableSequenceDB.java)(See attached file:
SequenceIteratorDB.java)
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