[Biojava-dev] ZipChemCompProvider

[Andreas Prlic]

I think it sounds useful. Want to provide a pull request?

A

On Mon, Feb 1, 2016 at 11:50 AM, Matt Larson <larsonmattr at gmail.com> wrote:

> There is a set of available Chemical Component Providers in BioJava
> including:
>
> *ReducedChemCompProvider* - no network access, limited set.
> *DownloadChemCompProvider* - network download of chemcomp files as needed.
> *AllChemCompProvider* - loads all chem comps from a file into memory.
>
> We've implemented another provider "*ZipChemCompProvider*" that has
> properties of both AllChemCompProvider and DownloadChemCompProvider.  It
> keeps the individual chemical components as a local zip archive.  It
> doesn't load the chemical components in memory, so it might be a bit faster
> than AllChemCompProvider.  Missing component files are downloaded when
> queried with the DownloadChemCompProvider then appended to the archive for
> future use.
>
> I can package this as a branch and submit this to BioJava if it seems like
> a useful alternative ChemComp provider.  What do you guys think?
>
> --
> Matt Larson, PhD
> DNASTAR, Inc.
> Madison, WI  53705 U.S.A.
>
> _______________________________________________
> biojava-dev mailing list
> biojava-dev at mailman.open-bio.org
> http://mailman.open-bio.org/mailman/listinfo/biojava-dev
>



-- 
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Dr. Andreas Prlic
RCSB PDB Protein Data Bank
Technical & Scientific Team Lead
University of California, San Diego

Editor Software Section
PLOS Computational Biology

BioJava Project Lead
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