[Biojava-dev] Scop page seems to be gone, build is broken.

[Steve Darnell]

Greetings,

I read in the PDB mailing list that SCOP and ASTRAL were updated to version 1.75C last Thursday (10/10/2013). Did they make any changes to break to Scop services in Biojava?

~Steve

-----Original Message-----
From: biojava-dev-bounces at lists.open-bio.org [mailto:biojava-dev-bounces at lists.open-bio.org] On Behalf Of Andreas Prlic
Sent: Sunday, October 13, 2013 11:28 PM
To: John Chilton
Cc: biojava-dev at lists.open-bio.org
Subject: Re: [Biojava-dev] Scop page seems to be gone, build is broken.

Hi John,

yes, you are right, it looks as if SCOP is currently down. Uncommenting the junit test is prob a good temporary fix, until they are back online again.

Andreas


On Sun, Oct 13, 2013 at 9:05 PM, John Chilton <jchilton22 at gmail.com> wrote:

> ATTN Andreas Prlic, you are listed as an author on ScopInstallation.
>
> I'm trying to do a "mvn install" to run tests and generate a working 
> jar but getting the following:
>
> Tests in error:
>   ScopInstallationTest.testComments:41 ? NullPointer
>
> Debugging the test found that the Scop file download location seems to 
> be down (the ScopInstallation class tries to download "
> http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.com.scop.txt_1.75").
>
> Indeed, even the link to the homepage from Google is down. I will keep 
> trying through the week, but in case the page is actually gone, how 
> would you like to proceed?
>
> I will comment out this test for now.
>
> John Chilton
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> biojava-dev at lists.open-bio.org
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