[Biojava-dev] new release(s) before BOSC/ISMB conferences

[Michael Heuer]

Hello Andreas,

Appears that I'm going to need some walkthough docs for the release
process on github.

The scm elements in biojava/biojava pom.xml point to the
biojava/biojava repo; does that mean I need to perform the release
from a cloned biojava/biojava repo or it is possible to perform the
release from my fork?

Then I'm still confused by the different accounts; I can ssh via key
to cloudportal.open-bio.org, but on deploy maven is asking for a ssh
password for portal.open-bio.org

$ mvn deploy
...
[INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ core ---
Downloading: scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven/org/biojava/core/1.8.3-SNAPSHOT/maven-metadata.xml
Password for mheuer at portal.open-bio.org: ********
[WARNING] Could not transfer metadata
org.biojava:core:1.8.3-SNAPSHOT/maven-metadata.xml from/to
biojava-maven-repo
(scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven/):
Cannot connect. Reason: Auth fail
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] biojava-legacy .................................... SUCCESS [13.426s]
[INFO] bytecode .......................................... SUCCESS [19.947s]
[INFO] core .............................................. FAILURE [3:05.411s]
[INFO] alignment ......................................... SKIPPED
[INFO] biosql ............................................ SKIPPED
[INFO] blast ............................................. SKIPPED
[INFO] das ............................................... SKIPPED
[INFO] sequencing ........................................ SKIPPED
[INFO] gui ............................................... SKIPPED
[INFO] phylo ............................................. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3:39.378s
[INFO] Finished at: Tue Jul 16 18:11:11 CDT 2013
[INFO] Final Memory: 20M/331M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-deploy-plugin:2.7:deploy
(default-deploy) on project core: Failed to retrieve remote metadata
org.biojava:core:1.8.3-SNAPSHOT/maven-metadata.xml: Could not transfer
metadata org.biojava:core:1.8.3-SNAPSHOT/maven-metadata.xml from/to
biojava-maven-repo
(scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven/):
Cannot connect. Reason: Auth fail -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with
the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :core

Feel free to take this off list if more appropriate.

   michael


On Mon, Jul 15, 2013 at 10:59 PM, Michael Heuer <heuermh at gmail.com> wrote:
> Well done, Andreas.
>
> I'll try to get one out for biojava-legacy tomorrow evening.
>
>    michael
>
>
> On Mon, Jul 15, 2013 at 9:53 AM, Andreas Prlic <andreas at sdsc.edu> wrote:
>> Hi Michael,
>>
>> In the spirit of release early and release often, I'll try to squeeze in a
>> release later today...
>>
>> Andreas
>>
>>
>> On Fri, Jul 12, 2013 at 1:04 PM, Michael Heuer <heuermh at gmail.com> wrote:
>>>
>>> Hello,
>>>
>>> I would like to cut a new release of biojava-legacy (version 1.8.3,
>>> which contains a few bug fixes and new minor features) before the
>>> BOSC/ISMB conferences and hackathon next week.
>>>
>>> Anyone willing to do the same for biojava proper (version 3.0.6)?
>>>
>>>    michael
>>> _______________________________________________
>>> biojava-dev mailing list
>>> biojava-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>>
>>
>>
>>