[Biojava-dev] GSoC - Final question about code exercise

[P. Troshin]

Hi David,

Its up to you really, the exercise omits many details intentionally to
see whether you can make sensible implementation decisions.
Choose what you feel is the most appropriate approach and make your
program easy to use.

Regards,
Peter


On 30 March 2012 01:42, David Felty <davfelty at gmail.com> wrote:at
> The directions for task 2 state:
>> Write two FASTA output files one with sequences which contains ambiguous characters and another one without.
>
> How should the input and output files be chosen? I currently have them
> hard-coded into a main method, but this is obviously not very useful.
> So should they be input on the command line, like:
>
> java -jar runme.jar input.fa ambiuous.fa unambiguous.fa
>
> Or should I just make a method, like:
>
> public static void task2(File in, File ambiguous, File unambiguous) { ... }
>
> Or would you prefer some other way?
>
> Thanks,
> David
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