[Biojava-dev] From [Biojava-l]: Chromatagraph reading in BioJava3?

Hannes Brandstätter-Müller biojava at hannes.oib.com
Tue Mar 13 06:01:17 UTC 2012


Darn it, should have gone to dev instead of the users list.

On Tue, Mar 13, 2012 at 06:56, Hannes Brandstätter-Müller
<biojava at hannes.oib.com> wrote:
> On Mon, Mar 12, 2012 at 16:04, Nick England <nickengland at gmail.com> wrote:
>> Hello all,
>>
>> I am trying to read some .scf files into BioJava3. I have found the
>> example code for 1.3
>> (http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence) but I
>> can't find any classes in the 3.0 API which look at all related to
>> those ones. Is it possible, or should I downgrade to 1.3 if I want to
>> be able to read .scf files?
>>
>> Thanks,
>>
>> Nick
>
> Should we port that to 3.0.x after the next release? Or for 3.0.3?
> Sounds like another nice addition to org.biojava3.genome.parsers -
> I'll take a look at it to see what info is stored in these scf files.
>
> Hannes
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