[Biojava-dev] CATH parser

[Andreas Prlic]

Hi Daniel,

That would be great! It is probably best to try to model this in a
similar way to SCOP.

The central interface for this is ScopDatabase. This is supported by
three different implementations, one that downloads and (re-)uses a
local copy of SCOP, one that fetches SCOP data via remote web services
and a third class that provides access for the Berkeley version of
SCOP.

As such, a start would be to define such an interface for CATH and
then come up with an initial implementation for this.

Cheers,
Andreas




On Sat, Jun 2, 2012 at 9:52 PM, Daniel Asarnow <dasarnow at gmail.com> wrote:
> Hello BioJava devs,
>
> I recently noticed that a CATH parser is listed among the features
> requested for BioJava3. It happens that I have a CATH parser implemented in
> one of my projects, so it should be relatively easy for me to re-implement
> according to BioJava style and extend with any particular features I might
> have left out.
>
> I would like to know, (1) is this still a desired feature, (2) what
> functionality is needed and (3) what patterns should be used (and whether
> any existing classes provide a suitable paradigm).
>
> Best,
> -da
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