[Biojava-dev] [Biojava-l] FASTA Header Parser
Hannes Brandstätter-Müller
biojava at hannes.oib.com
Wed Jan 11 19:43:11 UTC 2012
On Wed, Jan 11, 2012 at 16:24, Scooter Willis <HWillis at scripps.edu> wrote:
> Hannes
>
> Looks like the length= is something I am specifically looking for to
> truncate as being redundant information and not part of the unique id for
> a header. Are you using "HG7JTKN01BFWC8 rank=0000030 x=474.5 y=10.0" as
> your unique ID?
So far I was using that (or rather, the whole header)
> Is this a custom header or something output from a sequencing
> instrument/software?
It's the output of the Roche/454 Titanium FLX Sequencer
> Does it make sense to formally support this header where the unique ID
> would be HG7JTKN01BFWC8 and rank x y would be added as meta data to the
> sequence?
As far as I know, the ID should be unique.
> I checked in the change to GenericFastaHeaderParser
Thanks, is there any ETA on a new official release? I don't want to
switch to the development version for my project.
Hannes
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