[Biojava-dev] biojava3-ws NCBI Qblast service improvement offer

[Gediminas Rimša]

Refactored the code a bit more and this is how I think it could look.

Package contents: current trunk of biojava3-ws + modified QBlast 
implementation.
The code works with part of my app provided in src/test/java folder, 
pretty much not tested beyond that.

Gediminas

On 2011-11-19 22:42, Scooter Willis wrote:
> Gediminas
>
> That would be great. Can you send me a couple working examples?
>
> Thanks
>
> Scooter
>
> On 11/19/11 2:28 PM, "Gediminas Rimša"<gediminas.rimsa at gmail.com>  wrote:
>
>> Hello,
>> while working on a project for my bioinformatics class I have rewritten
>> NCBIQBlast service in biojava3-ws module to support Entrez queries as
>> well as probably any other QBlast's URL API parameters.
>> I'd be happy to submit it for review (maybe as an alternate
>> implementation of RemotePairwiseAlignmentService interface?). I could
>> also write a short tutorial on how to easily get Java objects from Blast
>> XML output, as that was a little confusing at first.
>>
>> Gediminas
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