[Biojava-dev] translateN patch for RNAToAminoAcidTranslator

[Andy Yates]

Hi Brad,

I've gone & applied both bugfixes into BJ3 & they will be made available with the next release. Many thanks for them & for the accompanying test cases :)

Andy

On 10 Mar 2011, at 13:37, Brad Chapman wrote:

> Hey all;
> I was playing a bit with the TranscriptionEngine and the
> translateNCodons option was not working due to some null pointer
> exceptions trying to look up codons from non-existent "X" amino
> acids. 
> 
> Bugzilla seems unhappy right now; I get a big ol' 'Sorry, entering bugs 
> into the product BioJava has been disabled.' when trying to create a
> new bug, so the patch is here:
> 
> https://gist.github.com/864088
> 
> This complements my earlier patch for a small issue in
> getRNASequence:
> 
> http://bugzilla.open-bio.org/show_bug.cgi?id=3180
> 
> Thanks all -- Biojava 3 is great stuff,
> Brad
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-- 
Andrew Yates                   Ensembl Genomes Engineer
EMBL-EBI                       Tel: +44-(0)1223-492538
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/