[Biojava-dev] Error building biojava-live...

Sylvain Foisy Ph. D. sylvain.foisy at inflammgen.org
Mon Aug 29 18:17:49 UTC 2011


HI to all,

I am trying to build bj-live but end up with this error for TranslationTest:

-------------------------------------------------------------------------------
Test set: org.biojava3.core.sequence.TranslationTest
-------------------------------------------------------------------------------
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.027 sec <<< FAILURE!
org.biojava3.core.sequence.TranslationTest  Time elapsed: 0.026 sec  <<< ERROR!
java.lang.IllegalArgumentException: Location org/biojava3/core/sequence/BRCA2-cds.fasta resulted in a null InputStream
	at org.biojava3.core.sequence.io.util.ClasspathResource.createClasspathInputStream(ClasspathResource.java:121)
	at org.biojava3.core.sequence.io.util.ClasspathResource.getInputStream(ClasspathResource.java:100)
	at org.biojava3.core.sequence.TranslationTest.parseSequences(TranslationTest.java:40)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:27)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:59)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.executeTestSet(AbstractDirectoryTestSuite.java:115)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.execute(AbstractDirectoryTestSuite.java:102)
	at org.apache.maven.surefire.Surefire.run(Surefire.java:180)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.apache.maven.surefire.booter.SurefireBooter.runSuitesInProcess(SurefireBooter.java:350)
	at org.apache.maven.surefire.booter.SurefireBooter.main(SurefireBooter.java:1021)

Anybody has this sequence? 

Best

Sylvain





More information about the biojava-dev mailing list