[Biojava-dev] porting HMM classes from bj1.8 to bj3

[David Huen]

On Aug 12 2011, Andreas Prlic wrote:

>Hi Zhihua,
>
>good to see that your message made it through in the end. What IDE are
>you using? I recommend checking out the latest version of
>biojava-legacy (1.8) and  doing the refactoring on the (legacy) core
>module. A first step could be to break out a HMM module out of the old
>core. Then this module could be migrated to the 3.X design.  I see
>some difficulty coming up with how to deal with the Symbols from the
>1.X world, so let's keep discussing this as you make progress...
>

I'd just add that only the interpreted version needs porting. I have never 
found the compiled version to work.

-- 
David Huen
Dept of Genetics
University of Cambridge
CB2 3EH
U.K.