[Biojava-dev] [Bug 3083] PHYLIP parser goes into infinite loop on files with empty lines

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=3083





------- Comment #2 from rb-openbio at rbyers.net  2010-05-23 00:45 EST -------
Created an attachment (id=1503)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1503&action=view)
Patch that fixes the PHYLIP parser bug

The problem is the 'if (line.length() == 0) continue' - a new line isn't read,
so it just goes around forever.  In my patch I move the readLine() to the while
to ensure it's executed on every iteration (rather than at the end of the
body).


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