[Biojava-dev] [Bug 2854] Selection of protein alphabet is hardcoded in ProteinTools class

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2854





------- Comment #2 from kmjuris at gmail.com  2010-05-10 21:31 EST -------
Created an attachment (id=1500)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1500&action=view)
Proposed fix to ProteinTools

The proposed ProteinTools fix does not hardcode the selection of the
ProteinTools.getTAlphabet() when calling createProtein().  Rather, the fix
determines the appropriate alphabet based on theProtein string input.


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