[Biojava-dev] Biojava3-Core

[LAW Andrew]

Has anyone found a maven plugin that will reliably enforce coding styles?


On 12 May 2010, at 10:10, Andy Yates wrote:

> One thing as a co-contributor that I've noticed is there is a difference in coding style. I'm happy to adopt any coding style the majority agree with but I'd rather not do a huge commit changing 2 spaced tabs into 4 spaced tabs :). Can you send around your netbeans coding profile?
> 
> Andy
> 
> On 12 May 2010, at 02:39, Scooter Willis wrote:
> 
>> 
>> I just committed a fairly significant number of changes into BioJava3-core. If you don't have any code changes in core then probably better to delete the core package and check out again o avoid resolving lots of conflicts.
>> 
>> I also checked in the beginning of biojava3-genome which makes significant use of biojava3-core. The code is being used to take gene predictions from GeneMarkHMM, GeneID and GeneMark which all have their own version of gff, gff3 and gtf output. The code will take features from the predictions and maps them onto DNASequences and allows you to get ProteinSequence for each prediction. It is very much a work in progress and will be adding additional features in the next 30 days for a gene annotation project that is part of the day job.
>> 
>> Let me know if you have any comments or suggestions. I promise better java docs, test cases and wiki overview soon.
>> 
>> Scooter
>> _______________________________________________
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>> biojava-dev at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
> 
> -- 
> Andrew Yates                   Ensembl Genomes Engineer
> EMBL-EBI                       Tel: +44-(0)1223-492538
> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
> Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/
> 
> 
> 
> 
> 
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Later,

Andy
--------
Yada, yada, yada...

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The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.