[Biojava-dev] Sequence interface - exceptions

[Scooter Willis]

Jake

Do you have any updates to the code? I can go ahead and check it in.

Scooter

On Jul 19, 2010, at 8:49 PM, Andreas Prlic wrote:

> Hi Jake,
> 
> Thanks for this. Would it be possible to add a "Cookbook" page for how to
> use the NCBISequence reader as well? Some examples would be great... I
> understand the NCBI now requires scripts to provide email address etc....
> Would be good to explain how to do this. We just started to work on more
> docu here:
> 
> http://biojava.org/wiki/BioJava:CookBook3.0
> 
> Thanks,
> Andreas
> 
> 
> 
> On Mon, Jul 19, 2010 at 6:49 AM, <jake at researchtogether.com> wrote:
> 
>> Hi All,
>> 
>> I've been drawing up a design for the work I have done on the NCBI
>> SequenceReader and I've talked through some things with Scooter which I have
>> put on the wiki at:
>> http://www.biojava.org/wiki/BioJava3_NCBISequenceReader_Design#Design_Overview
>> 
>> One thing I would like to throw open for discussion is the possibility of
>> changing the Sequence interface so that the methods can throw a new
>> exception - SequenceException.
>> 
>> Any opinions? :)
>> 
>> Cheers,
>> Jake
>> _______________________________________________
>> biojava-dev mailing list
>> biojava-dev at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>> 
> 
> 
> 
> -- 
> -----------------------------------------------------------------------
> Dr. Andreas Prlic
> Senior Scientist, RCSB PDB Protein Data Bank
> University of California, San Diego
> (+1) 858.246.0526
> -----------------------------------------------------------------------
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