[Biojava-dev] build problem

[Andreas Prlic]

If you update the class, this should be fixed now. Was a problem with
a hard coded /tmp path...

Andreas



On Mon, Aug 9, 2010 at 12:26 PM, George Waldon <gwaldon at geneinfinity.org> wrote:
> Hi,
>
> I am getting the following failures in org.biojava.bio.structure.align.benchmark.MultipleAlignmentTest:
>
> Fetching ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/pdb1hcy.ent.gz
> writing to \tmp\hc\pdb1hcy.ent.gz
> java.io.FileNotFoundException: \tmp\hc\pdb1hcy.ent.gz (The system cannot find the path specified)
> ...
>
> and
>
> Fetching ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/pdb1nls.ent.gz
> writing to \tmp\nl\pdb1nls.ent.gz
> java.io.FileNotFoundException: \tmp\nl\pdb1nls.ent.gz (The system cannot find the path specified)
> at java.io.FileOutputStream.open(Native Method)
> at java.io.FileOutputStream.<init>(FileOutputStream.java:179)
> at java.io.FileOutputStream.<init>(FileOutputStream.java:131)
> at org.biojava.bio.structure.io.PDBFileReader.downloadPDB(PDBFileReader.java:430)
> ...
>
> Does anyone has a solution for this? I am building from within NetBeans.
>
> Thanks,
> George
>



-- 
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
(+1) 858.246.0526
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