[Biojava-dev] AbstractMethodError while enriching a sequence

[Mark Schreiber]

I seem to recall there is a subsequence method in RichSequence.Tools. This
may remove the need for enrichment?

- mark

On 3 Mar 2009, 1:36 PM, <gwaldon at geneinfinity.org> wrote:

Hi,

I am catching this at:

java.lang.AbstractMethodError:
org.biojava.bio.seq.projection.TranslateFlipContext__org_biojavax_bio_seq_RichFeature.getAnnotation()Lorg/biojavax/RichAnnotation;
       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
       at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
       at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
       at java.lang.reflect.Method.invoke(Method.java:585)
       at
org.biojava.bio.seq.impl.TemplateUtils.populate(TemplateUtils.java:125)
       at
org.biojava.bio.seq.impl.TemplateUtils.makeTemplate(TemplateUtils.java:135)
       at
org.biojava.bio.seq.projection.ProjectedFeature.makeTemplate(ProjectedFeature.java:159)
       at
org.biojavax.bio.seq.RichSequence$Tools.enrich(RichSequence.java:588)

while enriching a sequence, which was actually a SequenceTools.subsequence
of a RichSequence.

I am not sure what to do with this error. Has someone any suggestion?

George
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