[Biojava-dev] Fwd: Assembly data reading

[Paolo Pavan]

Hi,
I would like to post again with some adjustments a question I put some
times ago because maybe this is a more correct list, apologize for the
repeating.
Can someone kindly give me his advise?

thank you in advance,
Paolo


---------- Forwarded message ----------
From: Paolo Pavan <paolo.pavan at gmail.com>
Date: 2009/7/9
Subject: Assembly data reading
To: Biojava-l at lists.open-bio.org


Hi everybody,
I'm almost new to this topic, I would like to know if there is
something can help me to load in my java program data from a large 454
contig. I need to retain in memory and access data from the single
reads forming the contig too.
I suppose these informations are in a *.sff file, if it is not
possible to load such file it should be ok to load a *.ace (phrap)
data file that I have too.
Many thanks for any suggestion you can give me!

Greetings,
Paolo