[Biojava-dev] [Bug 2434] New: bio.seq.io.UniProtFormat error?

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2434

           Summary: bio.seq.io.UniProtFormat error?
           Product: BioJava
           Version: 1.5
          Platform: PC
        OS/Version: Windows XP
            Status: NEW
          Severity: normal
          Priority: P2
         Component: seq.io
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: lisujun at gmail.com


Exception in thread "main" org.biojava.bio.BioException: Could not read
sequence
        at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:113)
        at
org.biojavax.bio.seq.io.RichStreamReader.nextSequence(RichStreamReader.java:92)
        at DeleteHighAbundance.getDescription(DeleteHighAbundance.java:41)
        at DeleteHighAbundance.main(DeleteHighAbundance.java:47)
Caused by: org.biojava.bio.seq.io.ParseException: 

A Exception Has Occurred During Parsing. 
Please submit the details that follow to biojava-l at biojava.org or post a bug
report to http://bugzilla.open-bio.org/ 

Format_object=org.biojavax.bio.seq.io.UniProtFormat
Accession=null
Id=
Comments=Bad ID line
Parse_block=ID   IPI00000001.1         IPI;      PRT;   577 AA.
Stack trace follows ....


        at
org.biojavax.bio.seq.io.UniProtFormat.readRichSequence(UniProtFormat.java:286)
        at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110)
        ... 3 more

========

when i used the RichSequence.IOTools.readUniprot to read the IPI DAT(Uniprot
format), this error happened.


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