[Biojava-dev] BioJava 3 Proposal

[Richard Holland]

That sounds cool. Could you add your suggestion to the wiki?

cheers,
Richard

On Fri, October 5, 2007 6:24 pm, george waldon wrote:
> Would-it be helpful to implement SPI for manipulating sequence formats?
>
> For example, we could have:
>
> RichSequenceFormat fasta = Lookup.getDefault().lookup(FastaFormat.class);
>
> This would allow anyone to implement their own version of sequence format.
> The lookup would return the internal implementation by default or an
> external one is any is found.
>
> - George
>
>
>> -----Original Message-----
>> From: biojava-dev-bounces at lists.open-bio.org [mailto:biojava-dev-
>> bounces at lists.open-bio.org] On Behalf Of Mark Schreiber
>> Sent: Tuesday, October 02, 2007 4:59 AM
>> To: Richard Holland
>> Cc: biojava-dev at biojava.org
>> Subject: Re: [Biojava-dev] BioJava 3 Proposal
>>
>> Hi -
>>
>> There was some talk of making biojava3 aware of plugins and service
>> provider interfaces (SPI). It is therefore timely that Sun have
>> released an article on how this can easily be achieved now that the
>> ServiceLoader API has been exposed in JSE6
>>
>> http://java.sun.com/developer/technicalArticles/javase/extensible/
>>
>> - Mark
>>
>> On 10/1/07, Richard Holland <holland at ebi.ac.uk> wrote:
>> > -----BEGIN PGP SIGNED MESSAGE-----
>> > Hash: SHA1
>> >
>> > I see it's all gone a bit quiet this last week or two!
>> >
>> > Here is the current proposal as it stands:
>> >
>> > http://biojava.org/wiki/BioJava3_Proposal
>> >
>> > (There's also quite a bit of discussion on the topic on the associated
>> > 'discussion' page).
>> >
>> > Please make comments directly to the wiki page. The more comments we
>> > get, the more likely it is we will proceed with a development plan
>> which
>> > suits the majority of our users.
>> >
>> > I plan to make a summary of this page public to biojava-l sometime in
>> > November. This summary page would then be put through the same
>> feedback
>> > and discussion process, and would be open for anyone to comment
>> > (including, most importantly, our users). The final plan would be
>> based
>> > on the outcome of these public discussions.
>> >
>> > cheers,
>> > Richard
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>> > iD8DBQFHAOC34C5LeMEKA/QRAqQzAJoDxrSbqBcxZQZayKIzx0k5NJguNwCeO+c4
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-- 
Richard Holland
BioMart (http://www.biomart.org/)
EMBL-EBI
Hinxton, Cambridgeshire CB10 1SD, UK