[Biojava-dev] [Bug 2250] New: Genbank format error

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Mar 26 08:23:09 UTC 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2250

           Summary: Genbank format error
           Product: BioJava
           Version: live (CVS source)
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: seq.io
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: mark.schreiber at novartis.com


I think that the following error was caused by the last fix to GenbankFormat

Format_object=org.biojavax.bio.seq.io.GenbankFormat
Accession=null
Id=null
Comments=Bad locus line
Parse_block=LOCUS   NM_182008               1629 bp    mRNA    linear   INV
23-MAR-2007
Stack trace follows ....


        at
org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:323)
        at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110)
        ... 2 more


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