[Biojava-dev] [Bug 2250] New: Genbank format error
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Mon Mar 26 08:23:09 UTC 2007
http://bugzilla.open-bio.org/show_bug.cgi?id=2250
Summary: Genbank format error
Product: BioJava
Version: live (CVS source)
Platform: PC
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P2
Component: seq.io
AssignedTo: biojava-dev at biojava.org
ReportedBy: mark.schreiber at novartis.com
I think that the following error was caused by the last fix to GenbankFormat
Format_object=org.biojavax.bio.seq.io.GenbankFormat
Accession=null
Id=null
Comments=Bad locus line
Parse_block=LOCUS NM_182008 1629 bp mRNA linear INV
23-MAR-2007
Stack trace follows ....
at
org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:323)
at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110)
... 2 more
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