[Biojava-dev] [Bug 2223] New: newline characters in RichSequence description

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2223

           Summary: newline characters in RichSequence description
           Product: BioJava
           Version: live (CVS source)
          Platform: PC
        OS/Version: Windows XP
            Status: NEW
          Severity: normal
          Priority: P2
         Component: seq.io
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: gwaldon at geneinfinity.org


The biojavax genbank parser returns a RichSequence with a description that
sometimes contains newline characters derived from the inital genbank file
(keyword DEFINITION and following description, which encompasses one or several
lines). This is particularly annoying when converting to other file formats. It
might be the same for with embl files. This is reproduced by parsing any
genbank file containing multiple lines in the DESCRIPTION keywords with
RichSequence.IOTools.readGenbankDNA, e.g. try AAB31603.


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