[Biojava-dev] Request for applet for drawing ab1 or scf files...

[Andy Yates]

Hi Philip,

There is also the bioview2 project being run by members of the Cancer 
Genome Project available from http://code.google.com/p/bioview2/. The 
code works alongside biojava's ABI & SCF parsers but with it's own 
drawing code & is intended to render portions of traces to files rather 
than work in a more GUI fashion. There used to be a Java webstart 
program written by Rhett Sutphin (the person responsible for writing the 
original chromatogram code) but it seems to have disappeared.

Personally I would follow Richard's suggestion & look at using the 
Chromatogram drawing code available in BioJava. The code itself is very 
straightforward to use & very configurable.

Good luck

Andy

Philip E Macmenamin wrote:
> Hi, 
> 
> Does anyone know of an Applet that will act as a Chromatogram Viewer given ab1 or scf file? 
> We hava / had one, however I only have the class file, and it allegedly does not run on Microsoft's wonderful Vista operating system. Only everywhere else. 
> Since I have only the class file, I can't really monkey around with what I have. 
> If anyone can give me, or point me to anything that would do the job, I would be very grateful and credit you as author on the site. 
> 
> Thanks again for any help, 
> 
> Philip MacMenamin, 
> 
> Center for Comparative Functional Genomics, 7th fl.
> Department of Biology
> New York University.
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