[Biojava-dev] [Bug 2175] IndexOutOfBoundsException still occurring on SCF.create(File file)

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2175


holland at ebi.ac.uk changed:

           What    |Removed                     |Added
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             Status|NEW                         |ASSIGNED




------- Comment #2 from holland at ebi.ac.uk  2007-01-03 12:13 -------
1) please check that your SCF file is version 2 or version 3. More recent
versions are not yet supported.

2) the exception occurs whilst parsing a PRIVATE block in your SCF file. The
block is supposed to specify its size in the header and its offset from the
start, then the parser uses this size to read exactly the right amount of data
from the right location. In your case it sounds like the header contains an
incorrect (too large) size or an incorrect (too late) offset, and so the parser
is attempting to read more data than is actually present at the given offset.
This would be a bug in the SCF file not the parser.

Please could you check the above and get back to me - the file itself would be
useful too.


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