[Biojava-dev] RichSequence output without namespace

[Mark Schreiber]

Hi Robin -

RichSequenceIOTools.writeFasta uses the FastaFormat object to
construct the sequence name.  It might be worth extending FastaFormat
to add methods that let you modify what is output in the name line.
If you do it would probably be worth checking in to the CVS.

You could then look at providing an overloaded writeFasta method that
allows you to configure the output.

- Mark

On 8/11/07, Emig, Robin <Robin.Emig at pioneer.com> wrote:
> Is there anyway to use RichSequence.IOTools.writeFasta to output just
> the sequence name as the name and nothing else?
> Ie
> >SeqName
> Aatg
>
> Vs
>
> >Namespace|Seqname|SeqName
> Or
> >|Seqname|Seqname
>
>
> Thanks
> -Robin
>
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