[Biojava-dev] Alignment SmithWaterman and NW

Thu Nov 9 01:55:37 UTC 2006

Hi Robin -

>From my understanding of NW and SW this should not happen. Can you log 
this in Bugzilla (from the www.biojava.org page).

- Mark

Mark Schreiber
Research Investigator (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com
www.dengueinfo.org

phone +65 6722 2973
fax  +65 6722 2910

"Emig, Robin" <Robin.Emig at pioneer.com>
Sent by: biojava-dev-bounces at lists.open-bio.org
11/09/2006 06:27 AM

        To: 
        cc:     <biojava-dev at lists.open-bio.org>, (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] Alignment SmithWaterman and NW

                 I just test out the alignment procedure in biojava and 
found a
possible issue. When aligning two sequences, I get an alignment which
contains gaps at the same position in both sequences. This seems strange
to me, can it be correct?
-Robin

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