[Biojava-dev] Java API for Global Alignment

[Russ Kepler]

On Tuesday 04 July 2006 04:44 am, Michael Tran wrote:

> Looking for a Java API to do global alignments (something like a clustalw
> alignment).

I think most folks have simply implemented a parser for clustalw output to 
generate a FlexibleAlignment when they needed that.  I've got one, and a 
parser for the Paracel CAML output from their genomic scale assembler as 
well.