[Biojava-dev] ensembl-das

[mark.schreiber at group.novartis.com]

Hi Olov -

The biojava ensembl bridge source can be found at 
http://www.biojava.org/download/biojava-ensembl/
The dazzle server is at http://www.biojava.org/download/dazzle/
There is some documentation for Dazzle at http://www.biojava.org/dazzle/
There are also some exercises at 
http://www.biojava.org/bootcamp/exercises/dazzle/index.html which may now 
be a bit out of date.

Tomas is probably the best person to answer your other questions.

Hope this helps,

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910





"Olov A Lindqvist" <kb99liol at dtek.chalmers.se>
Sent by: biojava-dev-bounces at portal.open-bio.org
09/24/2004 02:24 PM
Please respond to kb99liol

 
        To:     biojava-dev at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] ensembl-das


Hello!

I would appreciate some information regarding the files in

http://www.biojava.org/download/ensembl-das/

I am trying to get my Dazzle DAS server up and running to be able to share
annotations from my local ensembl mirror. For some reason I am not able to
get a type list from my DAS server or serve other annotations than exons,
translations and transcripts. Maybe this is not the correct forum for this
question but I will give it a try.

What is the difference between the different files in the directory above?
What is the difference between 23 and 23a? I am using the
homo_sapiens_core_23_34e collection of tables.

Can you give me a hint on where to find documentation on the ensembl-das
bridge plugins and where to find Java source code?

Regards

Olov Lindqvist


-- 
Olov Lindqvist


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