[Biojava-dev] ScoringMatrix interface/implementations

[Rahul Karnik]

[Re-sending with URL instead of attachment]

As a first step in the building of a framework for sequence alignment, I
have written:

- a ScoringMatrix interface
- two simple implementations
- a matrix reader
- a junit test case and a test file

Please let me know if and how I should integrate this ScoringMatrix
design with the existing WeightMatrix used with the HMM code. Of course,
any other comments and suggestions are welcome too.

You can download the code from:

http://www.genebrew.com/biojava/scoring_matrix.tar.gz

Thanks,
Rahul