[Biojava-dev] (no subject)

[mark.schreiber at group.novartis.com]

Hi -

There is an emaple of calculating the mass and pI of a peptide on the 
biojava in anger page http://www.biojava.org/docs/bj_in_anger/index.htm

I haven't done an example for restriction digests but it's a good idea. I 
may put one up soon. Your first port of call would be the 
RestrcitionEnzymeManager class, this is where you get instances of the 
RestricitonEnzyme objects.

- Mark





"Vaishali k" <vmv100 at hotmail.com>
Sent by: biojava-dev-bounces at portal.open-bio.org
07/29/2004 01:28 AM

 
        To:     biojava-dev at biojava.org
        cc: 
        Subject:        [Biojava-dev] (no subject)


Hello,
I am very much new fo biojava.Will you please send me code for DB digest 
if 
readily available or can you guide to develope one to..
to read fasta file and cleave with different enzymes, calculate the mass . 

Should be able to show upto 3 missed cleavages.
The output will be location of the peptides, mass of peptide and the 
sequence.
I tried to use API and build the code by myself but didn't work.
Thanks in advance.

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