[Biojava-dev] BLAST(N) version 2.2.6 not supported

[mark.schreiber at group.novartis.com]

Hi -

Not sure when or if it will be supported. Supported mostly just means 
someone has taken the time to check the results look sensible. If you call 
the setModeLazy() mehtod on the BlastLikeSAXParser then it won't check the 
version. Be sure to check you get what you expect though.

Hope this helps

- Mark


Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
1 Science Park Road
#04-14 The Capricorn
Singapore 117528

phone +65 6722 2973
fax  +65 6722 2910





"Alistair Chalk \(CGB\)" <alistair.chalk at cgb.ki.se>
Sent by: biojava-dev-bounces at portal.open-bio.org
01/30/2004 05:30 PM
Please respond to alistair.chalk

 
        To:     <biojava-dev at biojava.org>
        cc: 
        Subject:        [Biojava-dev] BLAST(N) version 2.2.6 not supported


Hi,

When will blast version 2.26 be supported by the BlastLikeSAXParser?

Error whch parsing a BLASTN 2.2.6 file gives:

Program ncbi-blastn Version 2.2.6 is not supported by the biojava 
blast-like
parsing framework
        at
org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXParser.
java:241)
        at
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.java
:160

I'm making an effort to use biojava, but it isn't always easy :)

/Alistair

**********************************************
Ph.D. Student
Sonnhammer group
Center for Genomics and Bioinformatics
Karolinska Institute
Tel: +46 8 5248 6372
**********************************************






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