[Biojava-dev] Developing LD visualizer

[Schreiber, Mark]

Hi -
 
It really depends on how easily your api can interact with biojava. Possibly all you need are some bridge classes. Do you have javadocs for your api?
 
- Mark
 

	-----Original Message----- 
	From: Takaho A. Endo [mailto:endo at genetix-h.com] 
	Sent: Mon 8/09/2003 4:24 p.m. 
	To: biojava-dev at biojava.org 
	Cc: 
	Subject: Re: [Biojava-dev] Developing LD visualizer
	
	

	Hi Mark,
	
	   Thanks for your reply despite my poor English.
	   Another problems of my codes are that I did not follow manners of
	BioJava and I did not use useful libraries of it because I felt they
	are too general for my specific purpose at the time when I was
	developing.
	   Do I have to change my codes to apply Symbol and Sequence APIs in
	order to avoid code-duplication?
	   It is easy to modify package names of my source codes into the same
	as BioJava codes,  and I intend to.  However, I will ask you for advice
	to apply BioJava AIPs if required.
	
	   Thanks.
	--
	Takaho A. Endo, Toaki University, Japan.
	
	
	
	
	On 2003.9.8, at 11:17 Asia/Tokyo, Schreiber, Mark wrote:
	
	> Hi -
	>
	> The development version of biojava is targetting Java 1.4 so this
	> shouldn't be a problem. If you take a look at the core Symbol and
	> Sequence API's you'll probably get some idea of how you might be able
	> to integrate you LD work.
	>
	> If you get stuck, just ask some questions on the list.
	>
	> - Mark
	>
	>
	>       -----Original Message-----
	>       From: Takaho A. Endo [mailto:endo at genetix-h.com]
	>       Sent: Mon 8/09/2003 12:19 p.m.
	>       To: biojava-dev at biojava.org
	>       Cc:
	>       Subject: [Biojava-dev] Developing LD visualizer
	>      
	>      
	>
	>       Dear all,
	>      
	>          I am studying in medical faculty of Tokai University, Japan.
	>          For a certain sake I have developed a visualizing application of
	>       linkage disequilibrium.
	>      
	>          The name of the application is ALDER (autonomic linkage
	>       disequilibrium (LD) expression resources). This is a GOLD(1)-like but
	>       finer application written in Java, which calculates LD by itself and
	>       shows LD graphs reflecting marker distance.
	>      
	>          Due to current trend, we are required to show haplotype blocks in
	>       papers of linkage/association studies.
	>          I think my application is useful for such purposes.
	>      
	>          You can download binary, sample data and source codes from my
	>       personal site (2).
	>          I would like to contribute to BioJava project with my program if
	> you
	>       accept, although it requires JRE 1.4 or more which is different from
	>       other codes in your project.
	>          I am glad with any opinions and comments for my program.
	>      
	>          Best regards.
	>      
	>      
	>       1) http://www.sph.umich.edu/csg/abecasis/GOLD/download/index.html
	>       2) http://homepage.mac.com/takaho_e/biology/alder/index.html
	>      
	>       ---
	>       Takaho A. Endo
	>      
	>       _______________________________________________
	>       biojava-dev mailing list
	>       biojava-dev at biojava.org
	>       http://biojava.org/mailman/listinfo/biojava-dev
	>      
	>
	>
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